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1.
PLoS One ; 13(12): e0208948, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30532162

RESUMO

Increasing ß-carotene (a vitamin A precursor) content in Triticum turgidum L. ssp. durum (durum wheat) grains is important to improve pasta nutritional quality. Studies in other species show that altering the expression of LCYE genes increases the flux towards the ß-ß branch, accumulating higher ß-carotene levels. Durum wheat is a tetraploid species that has two LCYE genes (LCYE-A and LCYE-B) associated to the A and B genomes. The objective of this work was to produce durum wheat LCYE mutants through EMS to potentially increase ß-carotene content. The LCYE point mutations created with EMS were identified using a Kronos TILLING (Targeting Induced Local Lesion IN Genomes) mutant population. Specific primers that amplified exons 3 through 10 of the LCYE genes were designed and validated. To simplify the TILLING procedure, fragments were digested with CJE (Celery Juice Extract) and visualized on 2% agarose gels. 6X mutant pools were identified, which showed cleavage products and then made into 2X pools to identify mutant individuals. LCYE mutants were then sequenced and evaluated with BLOSUM62, SIFT and PSSM algorithms. Mutants with substitutions W437*, P334L and G368R in LCYE-A and P405L, G352R and T393I in LCYE-B predicted to affect protein function were selected. Substitution W437* increased ß-carotene in 75% and overall total carotenoids content in leaves of the mutant 2426 (A1 mutant line), but no significant differences relative to the control were found in grains through HPLC. Finally, the increased levels of ß-carotene on leaves have potential applications to improving plant resistance under contaminated environmental conditions.


Assuntos
Genoma de Planta/genética , Liases Intramoleculares/genética , Triticum/genética , beta Caroteno/genética , Alelos , Cromatografia Líquida de Alta Pressão , Regulação da Expressão Gênica de Plantas , Humanos , Liases Intramoleculares/química , Liases Intramoleculares/isolamento & purificação , Mutação Puntual/genética , Triticum/química , Triticum/crescimento & desenvolvimento , beta Caroteno/metabolismo
2.
Biochim Biophys Acta ; 1844(9): 1541-9, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24768773

RESUMO

2-Chloromuconate cycloisomerase from the Gram-positive bacterium Rhodococcus opacus 1CP (Rho-2-CMCI) is an enzyme of a modified ortho-pathway, in which 2-chlorophenol is degraded using 3-chlorocatechol as the central intermediate. In general, the chloromuconate cycloisomerases catalyze not only the cycloisomerization, but also the process of dehalogenation of the chloromuconate to dienelactone. However Rho-2-CMCI, unlike the homologous enzymes from the Gram-negative bacteria, is very specific for only one position of the chloride on the substrate chloromuconate. Furthermore, Rho-2-CMCI is not able to dehalogenate the 5-chloromuconolactone and therefore it cannot generate the dienelactone. The crystallographic structure of the homooctameric Rho-2-CMCI was solved by molecular replacement using the coordinates of the structure of chloromuconate cycloisomerase from Pseudomonas putida PRS2000. The structure was analyzed and compared to the other already known structures of (chloro)muconate cycloisomerases. In addition to this, molecular docking calculations were carried out, which allowed us to determine the residues responsible for the high substrate specificity and the lack of dehalogenation activity of Rho-2-CMCI. Our studies highlight that a histidine, located in a loop that closes the active site cavity upon the binding of the substrate, could be related to the dehalogenation inability of Rho-2-CMCI and in general of the muconate cycloisomerases.


Assuntos
Adipatos/química , Proteínas de Bactérias/química , Histidina/química , Liases Intramoleculares/química , Rhodococcus/enzimologia , Ácido Sórbico/análogos & derivados , 4-Butirolactona/análogos & derivados , 4-Butirolactona/química , 4-Butirolactona/metabolismo , Adipatos/metabolismo , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Domínio Catalítico , Catecóis/química , Catecóis/metabolismo , Clorofenóis/química , Clorofenóis/metabolismo , Cristalografia por Raios X , Histidina/metabolismo , Liases Intramoleculares/isolamento & purificação , Liases Intramoleculares/metabolismo , Lactonas/química , Lactonas/metabolismo , Simulação de Acoplamento Molecular , Multimerização Proteica , Pseudomonas putida/química , Pseudomonas putida/enzimologia , Rhodococcus/química , Ácido Sórbico/química , Ácido Sórbico/metabolismo , Homologia Estrutural de Proteína , Relação Estrutura-Atividade , Especificidade por Substrato
3.
J Microbiol Biotechnol ; 23(2): 144-8, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23412054

RESUMO

Lycopene cyclase converts lycopene to beta-carotene by catalyzing the formation of two beta-rings at each end of the linear carotene structure. This reaction takes place as a two-step reaction in which both sides of of the lycopene molecule are cyclized into beta-carotene rings via the monocyclic gamma-carotene as an intermediate. The crtY gene coding for lycopene cyclase from Paracoccus haeundaensis consists of 1,158 base pairs encoding 386 amino acids residues. An expression plasmid containing the crtY gene (pET44a-CrtY) was constructed and expressed in Escherichia coli, and produced a recombinant protein of approximately 43 kDa, corresponding to the molecular mass of lycopene cyclase. The expressed protein was purified to homogeneity by His-tag affinity chromatography and showed enzymatic activity corresponding to lycopene cyclase. We also determined the lycopene substrate specificity and NADPH cofactor requirements of the purified protein. The Km values for lycopene and NADPH were 3.5 microM and 2 mM, respectively. The results obtained from this study will provide a wider base of knowledge on the enzyme characterization of lycopene cyclase at the molecular level.


Assuntos
Liases Intramoleculares/metabolismo , Paracoccus/enzimologia , Carotenoides/metabolismo , Cromatografia de Afinidade , Clonagem Molecular , Coenzimas/metabolismo , Escherichia coli/genética , Expressão Gênica , Liases Intramoleculares/química , Liases Intramoleculares/genética , Liases Intramoleculares/isolamento & purificação , Licopeno , Peso Molecular , NADP/metabolismo , Paracoccus/genética , Plasmídeos , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , beta Caroteno/metabolismo
4.
Phytochemistry ; 89: 6-14, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23398891

RESUMO

The chemical composition of the coffee beverage is extremely complex, being made up of hundreds of volatile and non-volatile compounds, many of which are generated in the thermal reactions that occur during the roasting process. However, in the raw coffee bean there are also compounds that survive roasting and are therefore extracted into the beverage. Monoterpenes are an example of this category, as their presence has been reported in the coffee flower, fruit, seed, roasted bean and in the beverage aroma. The present work describes the isolation, heterologous expression and functional characterization of three Coffea arabica cDNAs coding for monoterpene synthases. RNA was purified from C. arabica (cv. Catuai Red) flowers, seeds and fruits at 4 successive ripening stages. Degenerate primers were designed on the most conserved regions of the monoterpene synthase gene family, and then used to isolate monoterpene synthase-like sequences from the cDNA libraries. After 5'- and 3'-RACE, the complete transcripts of 4 putative C. arabica monoterpene synthases (CofarTPS) were obtained. Gene expression in different tissues and developmental stages was analysed. After heterologous expression in Escherichia coli, enzyme activity and substrate specificity were evaluated in vitro by incubation of the recombinant proteins with geranyl pyrophosphate (GPP), geranylgeranyl pyrophosphate (GGPP) and farnesyl pyrophosphate (FPP), precursors respectively of mono-, di- and sesquiterpenes. The reaction products were characterized by HS-SPME GC-MS. CofarTPS1 was classified as a limonene synthase gene, while CofarTPS2 and 3 showed lower activity with the production of linalool and ß-myrcene.


Assuntos
Coffea/enzimologia , Liases Intramoleculares/genética , Liases Intramoleculares/metabolismo , Odorantes/análise , Sequência de Aminoácidos , Biocatálise , Clonagem Molecular , Coffea/química , Coffea/genética , DNA Complementar/genética , Regulação da Expressão Gênica de Plantas , Liases Intramoleculares/química , Liases Intramoleculares/isolamento & purificação , Dados de Sequência Molecular
5.
Mol Plant Pathol ; 13(9): 1089-100, 2012 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-22827542

RESUMO

Plant roots react to pathogen attack by the activation of general and systemic resistance, including the lignification of cell walls and increased release of phenolic compounds in root exudate. Some fungi have the capacity to degrade lignin using ligninolytic extracellular peroxidases and laccases. Aromatic lignin breakdown products are further catabolized via the ß-ketoadipate pathway. In this study, we investigated the role of 3-carboxy-cis,cis-muconate lactonizing enzyme (CMLE), an enzyme of the ß-ketoadipate pathway, in the pathogenicity of Fusarium oxysporum f. sp. lycopersici towards its host, tomato. As expected, the cmle deletion mutant cannot catabolize phenolic compounds known to be degraded via the ß-ketoadipate pathway. In addition, the mutant is impaired in root invasion and is nonpathogenic, even though it shows normal superficial root colonization. We hypothesize that the ß-ketoadipate pathway in plant-pathogenic, soil-borne fungi is necessary to degrade phenolic compounds in root exudate and/or inside roots in order to establish disease.


Assuntos
Adipatos/metabolismo , Vias Biossintéticas , Fusarium/patogenicidade , Hidrocarbonetos Aromáticos/metabolismo , Doenças das Plantas/microbiologia , Solanum lycopersicum/microbiologia , Vias Biossintéticas/efeitos dos fármacos , Contagem de Colônia Microbiana , Linho/efeitos dos fármacos , Linho/microbiologia , Fusarium/efeitos dos fármacos , Fusarium/enzimologia , Fusarium/crescimento & desenvolvimento , Deleção de Genes , Hidrocarbonetos Aromáticos/farmacologia , Liases Intramoleculares/química , Liases Intramoleculares/isolamento & purificação , Solanum lycopersicum/efeitos dos fármacos , Controle Biológico de Vetores , Raízes de Plantas/efeitos dos fármacos , Raízes de Plantas/microbiologia , Esporos Fúngicos/efeitos dos fármacos , Esporos Fúngicos/crescimento & desenvolvimento
6.
Mol Plant ; 4(6): 965-84, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21527560

RESUMO

Nicotiana species of the section Alatae characteristically emit the floral scent compounds of the 'cineole cassette' comprising 1,8-cineole, limonene, myrcene, α-pinene, ß-pinene, sabinene, and α-terpineol. We successfully isolated genes of Nicotiana alata and Nicotiana langsdorfii that encoded enzymes, which produced the characteristic monoterpenes of this 'cineole cassette' with α-terpineol being most abundant in the volatile spectra. The amino acid sequences of both terpineol synthases were 99% identical. The enzymes cluster in a monophyletic branch together with the closely related cineole synthase of Nicotiana suaveolens and monoterpene synthase 1 of Solanum lycopersicum. The cyclization reactions (α-terpineol to 1,8-cineole) of the terpineol synthases of N. alata and N. langsdorfii were less efficient compared to the 'cineole cassette' monoterpene synthases of Arabidopsis thaliana, N. suaveolens, Salvia fruticosa, Salvia officinalis, and Citrus unshiu. The terpineol synthases of N. alata and N. langsdorfii were localized in pistils and in the adaxial and abaxial epidermis of the petals. The enzyme activities reached their maxima at the second day after anthesis when flowers were fully opened and the enzyme activity in N. alata was highest at the transition from day to night (diurnal rhythm).


Assuntos
Cicloexanóis/metabolismo , Liases Intramoleculares/metabolismo , Monoterpenos/metabolismo , Nicotiana/classificação , Nicotiana/metabolismo , Filogenia , Sequência de Aminoácidos , Domínio Catalítico , Eucaliptol , Evolução Molecular , Flores/enzimologia , Flores/genética , Flores/metabolismo , Liases Intramoleculares/química , Liases Intramoleculares/genética , Liases Intramoleculares/isolamento & purificação , Modelos Moleculares , Dados de Sequência Molecular , Transporte Proteico , Nicotiana/enzimologia , Nicotiana/genética
7.
J Biol Chem ; 284(14): 9443-57, 2009 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-19188364

RESUMO

Myo-inositol is an important constituent of membrane phospholipids and is a precursor for the phosphoinositide signaling pathway. It is synthesized from glucose 6-phosphate by myo-inositol-3-phosphate synthase (IP synthase), a homotrimer composed of a 68-kDa polypeptide in most mammalian tissues. It is a putative target for mood-stabilizing drugs such as lithium and valproate. Here, we show that the rat gene (Isyna1) encoding this enzyme generates a number of alternatively spliced transcripts in addition to the fully spliced form that encodes the 68-kDa subunit (the alpha isoform). Specifically, we identify a small 16-kDa subunit (the gamma(c) isoform) derived by an intron retention mechanism and provide evidence for its existence in rat tissues. The gamma(c) isoform is highly conserved in mammals, but it lacks the catalytic domain while retaining the NAD(+) binding domain. Both alpha and gamma(c) isoforms are predominantly expressed in many rat tissues and display apparent stoichiometry in purified enzyme preparations. An IP synthase polyclonal antibody not only detects the alpha and gamma(c) isoforms but also several other isoforms in pancreas, intestine, and testis suggesting that the holoenzyme is composed of unique subunits in various tissues. Interestingly, the alpha isoform is not expressed in the intestine. IP synthase activity assays using purified alpha and gamma(c) isoforms indicate that the latter negatively modulates alpha isoform activity, possibly by competing for NAD(+) molecules. Our findings have important ramifications for understanding the mood stabilization process and suggest that inositol biosynthesis is a highly regulated and dynamic process.


Assuntos
Regulação Enzimológica da Expressão Gênica , Liases Intramoleculares/química , Liases Intramoleculares/metabolismo , Processamento Alternativo/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Linhagem Celular , Ativação Enzimática , Humanos , Liases Intramoleculares/genética , Liases Intramoleculares/isolamento & purificação , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Espectrometria de Massas , Dados de Sequência Molecular , Peso Molecular , Especificidade de Órgãos , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Ratos , Alinhamento de Sequência , Transcrição Gênica/genética
8.
Proc Natl Acad Sci U S A ; 104(28): 11784-9, 2007 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-17606904

RESUMO

A fourth and large family of lycopene cyclases was identified in photosynthetic prokaryotes. The first member of this family, encoded by the cruA gene of the green sulfur bacterium Chlorobium tepidum, was identified in a complementation assay with a lycopene-producing strain of Escherichia coli. Orthologs of cruA are found in all available green sulfur bacterial genomes and in all cyanobacterial genomes that lack genes encoding CrtL- or CrtY-type lycopene cyclases. The cyanobacterium Synechococcus sp. PCC 7002 has two homologs of CruA, denoted CruA and CruP, and both were shown to have lycopene cyclase activity. Although all characterized lycopene cyclases in plants are CrtL-type proteins, genes orthologous to cruP also occur in plant genomes. The CruA- and CruP-type carotenoid cyclases are members of the FixC dehydrogenase superfamily and are distantly related to CrtL- and CrtY-type lycopene cyclases. Identification of these cyclases fills a major gap in the carotenoid biosynthetic pathways of green sulfur bacteria and cyanobacteria.


Assuntos
Chlorobium/enzimologia , Liases Intramoleculares/isolamento & purificação , Família Multigênica , Fotossíntese , Carotenoides/biossíntese , Chlorobium/genética , Escherichia coli/genética , Teste de Complementação Genética , Liases Intramoleculares/antagonistas & inibidores , Liases Intramoleculares/genética , Liases Intramoleculares/metabolismo , Licopeno , Dados de Sequência Molecular , Filogenia , Synechococcus/enzimologia , Synechococcus/genética
9.
J Bacteriol ; 189(5): 1664-74, 2007 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-17172348

RESUMO

Pseudomonas sp. strain MT1 has recently been reported to degrade 4- and 5-chlorosalicylate by a pathway assumed to consist of a patchwork of reactions comprising enzymes of the 3-oxoadipate pathway. Genes encoding the initial steps in the degradation of salicylate and substituted derivatives were now localized and sequenced. One of the gene clusters characterized (sal) showed a novel gene arrangement, with salA, encoding a salicylate 1-hydroxylase, being clustered with salCD genes, encoding muconate cycloisomerase and catechol 1,2-dioxygenase, respectively, and was expressed during growth on salicylate and chlorosalicylate. A second gene cluster (cat), exhibiting the typical catRBCA arrangement of genes of the catechol branch of the 3-oxoadipate pathway in Pseudomonas strains, was expressed during growth on salicylate. Despite their high sequence similarities with isoenzymes encoded by the cat gene cluster, the catechol 1,2-dioxygenase and muconate cycloisomerase encoded by the sal cluster showed unusual kinetic properties. Enzymes were adapted for turnover of 4-chlorocatechol and 3-chloromuconate; however, 4-methylcatechol and 3-methylmuconate were identified as the preferred substrates. Investigation of the substrate spectrum identified 4- and 5-methylsalicylate as growth substrates, which were effectively converted by enzymes of the sal cluster into 4-methylmuconolactone, followed by isomerization to 3-methylmuconolactone. The function of the sal gene cluster is therefore to channel both chlorosubstituted and methylsubstituted salicylates into a catechol ortho cleavage pathway, followed by dismantling of the formed substituted muconolactones through specific pathways.


Assuntos
Catecóis/metabolismo , Família Multigênica , Pseudomonas/genética , Salicilatos/metabolismo , Sequência de Bases , Catecol 1,2-Dioxigenase/metabolismo , Liases Intramoleculares/isolamento & purificação , Liases Intramoleculares/metabolismo , Oxigenases de Função Mista/isolamento & purificação , Dados de Sequência Molecular , Pseudomonas/metabolismo , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Ácido Sórbico/análogos & derivados , Ácido Sórbico/metabolismo
10.
Plant Physiol Biochem ; 44(7-9): 455-61, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-17010632

RESUMO

Chalcone isomerase (CHI; EC 5.5.1.6) is a key enzyme in the flavonoid biosynthesis pathway. We isolated a CHI gene (SmCHI) from a cDNA library derived from Saussurea medusa (Asteraceae) cell cultures. The cDNA and genomic sequences of SmCHI are the same; in other words, this gene is intronless. The coding region of the gene is 699 bp long, and its deduced protein consists of 232 amino acids with a predicted molecular mass of 24 kDa and a pI of 4.7. The deduced amino acid sequence of SmCHI shares 79.3% identity with CHI from Callistephus chinensis, a familial relative to S. medusa; this homology is higher than those with CHI's from any other plant species. A functional bioassay for SmCHI was performed by transforming Nicotiana tabacum plants in the sense or antisense orientation under the regulation of the cauliflower mosaic virus (CaMV) 35S promoter. Transgenic tobacco plants overexpressing sense SmCHI produced up to fivefold total flavonoids over wild-type tobacco plants, mainly due to an enhanced accumulation of rutin. Transgenic tobacco plants with antisense SmCHI accumulated smaller amounts of flavonoids; this is apparently brought about by suppressed expression of the endogenous CHI gene. CHI activities also positively correlated with the amounts of total flavonoids accumulated in the transgenic plants. It is concluded that overexpression of SmCHI can be used as a useful approach to increase flavonoid production in transgenic plants.


Assuntos
Liases Intramoleculares/metabolismo , Proteínas de Plantas/metabolismo , Saussurea/enzimologia , Sequência de Aminoácidos , Caulimovirus/genética , Células Cultivadas , Clonagem Molecular , DNA Complementar/isolamento & purificação , Flavonoides/metabolismo , Liases Intramoleculares/genética , Liases Intramoleculares/isolamento & purificação , Íntrons , Dados de Sequência Molecular , Proteínas de Plantas/genética , Proteínas de Plantas/isolamento & purificação , Plantas Geneticamente Modificadas , Regiões Promotoras Genéticas , Rutina/metabolismo , Nicotiana/enzimologia , Nicotiana/genética
11.
Comp Biochem Physiol B Biochem Mol Biol ; 143(3): 269-78, 2006 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-16423548

RESUMO

The Bahamian octocoral Pseudopterogorgia elisabethae is the source of pseudopterosins, diterpene glycosides with potent anti-inflammatory activity. The first committed step in pseudopterosin biosynthesis comprises the cyclisation of the universal diterpene precursor geranylgeranyl diphosphate to elisabethatriene. This reaction is catalysed by elisabethatriene synthase, which was purified to homogeneity from a crude coral extract. This represents the first purification to apparent homogeneity of a terpene cyclase from any marine source. The reaction kinetics of elisabethatriene synthase was examined using a steady state approach with (3)H-labelled isoprenyldiphosphates varying in carbon chain length (C(10), C(15), C(20)). For the reaction of elisabethatriene synthase with its natural substrate geranylgeranyl diphosphate, values of K(m) (2.3 x 10(-6) M), V(max) (3.4 x 10(4) nM elisabethatriene x s(-1)) and the specificity constant (k(cat)/K(m)= 1.8 x 10(-10) M(-1) x s(-1)) were comparable with diterpene cyclases from terrestrial plants. Elisabethatriene synthase also catalysed the conversion of C(15) and C(10) isoprenyldiphosphate analogues to monoterpene and sesquiterpene olefins, respectively. Kinetic parameters indicated that substrate specificity and K(m) of elisabethatriene synthase decreased with decreasing isoprenoid carbon chain length. Furthermore, GC-MS analysis showed increased product diversity with decreasing isoprenoid carbon chain length.


Assuntos
Antozoários/enzimologia , Diterpenos/química , Liases Intramoleculares/química , Fosfatos de Poli-Isoprenil/química , Animais , Liases Intramoleculares/isolamento & purificação , Cinética , Especificidade por Substrato
12.
Arch Biochem Biophys ; 433(1): 322-34, 2005 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-15581587

RESUMO

All known pseudouridine synthases have a conserved aspartic acid residue that is essential for catalysis, Asp-48 in Escherichia coli TruB. To probe the role of this residue, inactive D48C TruB was oxidized to generate the sulfinic acid cognate of aspartic acid. The oxidation restored significant but reduced catalytic activity, consistent with the proposed roles of Asp-48 as a nucleophile and general base. The family of pseudouridine synthases including TruB also has a nearly invariant histidine residue, His-43 in the E. coli enzyme. To examine the role of this conserved residue, site-directed mutagenesis was used to generate H43Q, H43N, H43A, H43G, and H43F TruB. Except for phenylalanine, the substitutions seriously impaired the enzyme, but all of the altered TruB retained significant activity. To examine the roles of Asp-48 and His-43 more fully, the pH dependences of wild-type, oxidized D48C, and H43A TruB were determined. The wild-type enzyme displays a typical bell-shaped profile. With oxidized D48C TruB, logk(cat) varies linearly with pH, suggesting the participation of specific rather than general base catalysis. Substitution of His-43 perturbs the pH profile, but it remains bell-shaped. The ascending limb of the pH profile is assigned to Asp-48, and the descending limb is tentatively ascribed to an active site tyrosine residue, the bound substrate uridine, or the bound product pseudouridine.


Assuntos
Ácido Aspártico/genética , Proteínas de Escherichia coli/química , Histidina/genética , Liases Intramoleculares/química , Liases Intramoleculares/genética , Ácido Aspártico/química , Pareamento de Bases , Sítios de Ligação/genética , Catálise , Escherichia coli/enzimologia , Escherichia coli/genética , Proteínas de Escherichia coli/genética , Variação Genética , Histidina/química , Concentração de Íons de Hidrogênio , Liases Intramoleculares/isolamento & purificação , Liases Intramoleculares/metabolismo , Transferases Intramoleculares , Cinética , Modelos Moleculares , Modelos Estruturais , Mutagênese Sítio-Dirigida , Oxirredução , Conformação Proteica , Estrutura Secundária de Proteína , Especificidade por Substrato , Tirosina/química , Uridina/química
13.
Biol Pharm Bull ; 27(12): 1979-85, 2004 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-15577217

RESUMO

cDNA cloning of a monoterpene synthase from Perilla frutescens whose steam-distilled oil contains 92.9% perillaketone, was performed by the PCR method using primers designed based on limonene synthase. The full-length nucleotide sequence of this cDNA consisted of 1978 bp including a 1827-bp translational region encoding a deduced protein of 608 amino acids, which was similar to that of limonene synthase from P. frutescens (85% identity). Functional expression of this clone in Escherichia coli yielded an active monoterpene synthase enzyme, which converted geranyl diphosphate into 53.8% myrcene, 20.9% sabinene, 19.8% linalool and 5.5% limonene. As for the extraction of reaction products, we performed SPME (solid phase micro extraction) as well as conventional solvent extraction, and compared these two extraction methods.


Assuntos
DNA Complementar/isolamento & purificação , Regulação Enzimológica da Expressão Gênica/fisiologia , Liases Intramoleculares/genética , Liases Intramoleculares/isolamento & purificação , Perilla frutescens/enzimologia , Sequência de Aminoácidos , DNA Complementar/biossíntese , DNA Complementar/genética , Liases Intramoleculares/biossíntese , Dados de Sequência Molecular , Filogenia
14.
Arch Microbiol ; 181(6): 428-34, 2004 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-15127184

RESUMO

The human fecal anaerobe Eubacterium ramulus is capable of degrading various flavonoids, including the flavone naringenin. The first step in the proposed degradation pathway is the isomerization of naringenin to the corresponding chalcone. Cell-free extracts of E. ramulus displayed chalcone isomerase activity. The enzyme from E. ramulus was purified to homogeneity. Its apparent molecular mass was estimated to be 136 and 129 kDa according to gel filtration and native polyacrylamide gel electrophoresis, respectively. Chalcone isomerase is composed of one type of subunit of 30 kDa. The purified enzyme catalyzed the isomerization of naringenin chalcone, isoliquiritigenin, and butein, three chalcones that differ in their hydroxylation pattern. N-bromosuccinimide, but also naringenin and phloretin, inhibited the purified enzyme considerably. This is the first report on a bacterial chalcone isomerase. The physiological function of the purified enzyme is unclear, but an involvement in the conversion of the flavanone naringenin to the chalcone is proposed.


Assuntos
Chalcona/análogos & derivados , Chalcona/metabolismo , Eubacterium/enzimologia , Flavanonas/metabolismo , Liases Intramoleculares/isolamento & purificação , Liases Intramoleculares/metabolismo , Bromosuccinimida/farmacologia , Chalcona/química , Chalconas , Cromatografia em Gel , Eletroforese em Gel de Poliacrilamida , Inibidores Enzimáticos/farmacologia , Flavanonas/química , Flavanonas/farmacologia , Flavonoides/metabolismo , Liases Intramoleculares/química , Isomerismo , Peso Molecular , Floretina/química , Floretina/farmacologia , Subunidades Proteicas/análise , Especificidade por Substrato
15.
Arch Biochem Biophys ; 424(1): 97-104, 2004 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-15019841

RESUMO

The pseudopterosins are diterpene glycosides isolated from the marine gorgonian, Pseudopterogorgia elisabethae, which exhibit anti-inflammatory and analgesic activity greater than the industry standard, indomethacin. Previously, we isolated the pseudopterosin diterpene cyclase product, elisabethatriene, using a radioactivity-guided isolation. Identification of this metabolite, and the conversion of labeled geranylgeranyl diphosphate to elisabethatriene, provided us with an assay to guide the isolation of the enzyme responsible for this cyclization. The soluble protein preparation from P. elisabethae has been partially purified (approximately 15,000-fold) using a combination of low-resolution anion-exchange, low-resolution hydrophobic interaction, high-resolution hydroxyapatite, and high-resolution anion-exchange chromatography. The diterpene cyclase was identified by comparing the molecular weight from gel permeation chromatography (approximately 47,000Da) with those of protein bands from purified fractions using SDS-PAGE gel electrophoresis. Kinetic analysis and evaluation of amino acid inhibition studies indicated that the enzyme displays similar characteristics to other terpenoid cyclases isolated from terrestrial sources. This report represents the first purification and characterization of a terpene biosynthetic enzyme from a marine invertebrate.


Assuntos
Cnidários/enzimologia , Glicosídeos/biossíntese , Liases Intramoleculares/metabolismo , Alcenos/química , Alcenos/metabolismo , Animais , Cnidários/química , Diterpenos/metabolismo , Inibidores Enzimáticos/farmacologia , Glicosídeos/química , Glicosídeos/metabolismo , Liases Intramoleculares/antagonistas & inibidores , Liases Intramoleculares/química , Liases Intramoleculares/isolamento & purificação , Magnésio/química , Magnésio/farmacologia , Fenilglioxal/farmacologia
16.
FEMS Microbiol Lett ; 231(1): 119-24, 2004 Feb 09.
Artigo em Inglês | MEDLINE | ID: mdl-14769475

RESUMO

cis,cis-Muconate cycloisomerase (MC) was purified to homogeneity from benzamide-assimilating Arthrobacter sp. BA-5-17. The purified enzyme showed high activities for cis,cis-muconate and 3-methyl-cis,cis-muconate, and preferred the 3-substituted derivatives over the derivatives with the same substituent at the 2 position as a substrate. A gene encoding MC of strain BA-5-17 was cloned and named catB. The catB gene was clustered with catR encoding a putative LysR-type regulator, catC encoding a putative muconolactone isomerase, and catA-II encoding the catechol 1,2-dioxygenase isozymes CD-III-1 and III-2. These genes showed the same orientation in transcriptional direction and the organization of cloned genes was catRBCA-II. In the phylogenetic analysis of MCs and chloro-MCs, the BA-5-17 and Streptomyces setonii MCs formed a subfamily, clearly distinguished from those of other MCs.


Assuntos
Arthrobacter/genética , Benzamidas/metabolismo , Catecóis/metabolismo , Genes Bacterianos , Liases Intramoleculares/genética , Sequência de Aminoácidos , Arthrobacter/enzimologia , Arthrobacter/metabolismo , Genes Reguladores , Liases Intramoleculares/isolamento & purificação , Liases Intramoleculares/metabolismo , Dados de Sequência Molecular , Filogenia
17.
Mol Genet Genomics ; 271(2): 180-8, 2004 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-14740205

RESUMO

Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage. Some natural carotenoids are asymmetrical molecules that are difficult to produce chemically. Biological production of carotenoids using specific enzymes is a potential alternative to extraction from natural sources. Here we report the isolation of lycopene beta-cyclases that selectively cyclize only one end of lycopene or neurosporene. The crtLm genes encoding the asymmetrically acting lycopene beta-cyclases were isolated from non-photosynthetic bacteria that produced monocyclic carotenoids. Co-expression of these crtLm genes with the crtEIB genes from Pantoea stewartii (responsible for lycopene synthesis) resulted in the production of monocyclic gamma-carotene in Escherichia coli. The asymmetric cyclization activity of CrtLm could be inhibited by the lycopene beta-cyclase inhibitor 2-(4-chlorophenylthio)-triethylamine (CPTA). Phylogenetic analysis suggested that bacterial CrtL-type lycopene beta-cyclases might represent an evolutionary link between the common bacterial CrtY-type of lycopene beta-cyclases and plant lycopene beta- and epsilon-cyclases. These lycopene beta-cyclases may be used for efficient production of high-value asymmetrically cyclized carotenoids.


Assuntos
Deinococcus/genética , Escherichia coli/enzimologia , Liases Intramoleculares/genética , Liases Intramoleculares/isolamento & purificação , Rhodococcus/genética , Sequência de Aminoácidos , Sequência de Bases , Carotenoides/biossíntese , Primers do DNA , Deinococcus/enzimologia , Escherichia coli/genética , Etilaminas/farmacologia , Evolução Molecular , Genes Reporter/genética , Liases Intramoleculares/antagonistas & inibidores , Dados de Sequência Molecular , Filogenia , Plasmídeos/genética , Rhodococcus/metabolismo , Alinhamento de Sequência , Análise de Sequência de DNA , Especificidade por Substrato
18.
Plant Physiol Biochem ; 42(11): 875-82, 2004 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-15694281

RESUMO

Melaleuca alternifolia (Cheel) is an Australia native tree harvested for its monoterpene-rich, essential oil. Monoterpene synthases (E.C. 4.2.3.20) were partially purified from the flush growth of the commercially important, high terpinen-4-ol chemotype of M. alternifolia. The purified fractions produced an acyclic monoterpene, linalool that is not present in the essential oil. To further characterise the monoterpene synthase, a cDNA library was constructed and 500 expressed sequence tags (ESTs) were sequenced to isolate putative terpene synthases. A single clone with similarity to the TspB gene sub-family of angiosperm monoterpene and isoprene synthases was isolated but was truncated at the 5' end. This single clone was used to design a probe for a cDNA library and was applied to isolate a full-length clone. This gene encoded a polypeptide 583 amino acids in length (67 kDa) including a putative transit peptide. Heterologous expression of the gene in Escherichia coli and subsequent assay of the recombinant enzyme did not result in the production of terpinen-4-ol, the major constituent of tea tree oil, or of its precursor sabinene hydrate. Significant quantities of linalool were observed in these assays, and in the assays of monoterpene synthase activity of a native enzyme in vitro, but the racemic nature of the linalool means that it may have a non-enzymatic origin.


Assuntos
Etiquetas de Sequências Expressas , Liases Intramoleculares/metabolismo , Melaleuca/enzimologia , Monoterpenos/química , Proteínas Recombinantes/metabolismo , Sequência de Bases , Clonagem Molecular , Escherichia coli/genética , Biblioteca Gênica , Liases Intramoleculares/isolamento & purificação , Melaleuca/genética , Dados de Sequência Molecular , Proteínas Recombinantes/isolamento & purificação
19.
Appl Environ Microbiol ; 69(9): 5636-42, 2003 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-12957954

RESUMO

The present study describes the (19)F nuclear magnetic resonance analysis of the conversion of 3-halocatechols to lactones by purified chlorocatechol 1,2-dioxygenase (ClcA2), chloromuconate cycloisomerase (ClcB2), and chloromuconolactone dehalogenase (ClcF) from Rhodococcus opacus 1cp grown on 2-chlorophenol. The 3-halocatechol substrates were produced from the corresponding 2-halophenols by either phenol hydroxylase from Trichosporon cutaneum or 2-hydroxybiphenyl 3-mono-oxygenase from Pseudomonas azelaica. Several fluoromuconates resulting from intradiol ring cleavage by ClcA2 were identified. ClcB2 converted 2-fluoromuconate to 5-fluoromuconolactone and 2-chloro-4-fluoromuconate to 2-chloro-4-fluoromuconolactone. Especially the cycloisomerization of 2-fluoromuconate is a new observation. ClcF catalyzed the dehalogenation of 5-fluoromuconolactone to cis-dienelactone. The ClcB2 and ClcF-mediated reactions are in line with the recent finding of a second cluster of chlorocatechol catabolic genes in R. opacus 1cp which provides a new route for the microbial dehalogenation of 3-chlorocatechol.


Assuntos
Adipatos/metabolismo , Dioxigenases , Liases Intramoleculares/metabolismo , Lactonas/metabolismo , Oxigenases/metabolismo , Cromatografia Líquida de Alta Pressão , Liases Intramoleculares/isolamento & purificação , Lactonas/isolamento & purificação , Espectroscopia de Ressonância Magnética , Oxirredutases/isolamento & purificação , Oxirredutases/metabolismo , Oxigenases/isolamento & purificação , Rhodococcus/enzimologia
20.
Arch Biochem Biophys ; 417(2): 203-11, 2003 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-12941302

RESUMO

Monoterpene cyclization reactions are initiated by ionization and isomerization of geranyl diphosphate, and proceed, via cyclization of bound linalyl diphosphate, through a series of carbocation intermediates with ultimate termination of the multistep cascade by deprotonation or nucleophile capture. Three structurally and mechanistically related monoterpene cyclases from Salvia officinalis, (+)-sabinene synthase (deprotonation to olefin), 1,8-cineole synthase (water capture), and (+)-bornyl diphosphate synthase (diphosphate capture), were employed to explore the structural determinants of these alternative termination chemistries. Results with chimeric recombinant enzymes, constructed by reciprocally substituting regions of sabinene synthase with the corresponding sequences from bornyl diphosphate synthase or 1,8-cineole synthase, demonstrated that exchange of the C-terminal catalytic domain is sufficient to completely switch the resulting product profile. Exchange of smaller sequence elements identified a region of roughly 70 residues from 1,8-cineole synthase that, when substituted into sabinene synthase, conferred the ability to produce 1,8-cineole. A similar strategy identified a small region of bornyl diphosphate synthase important in conducting the anti-Markovnikov addition to the bornane skeleton. Observations made with these chimeric monoterpene cyclases are discussed in the context of the recently determined crystal structure for bornyl diphosphate synthase.


Assuntos
Liases Intramoleculares/química , Liases Intramoleculares/classificação , Salvia/química , Salvia/enzimologia , Sequência de Aminoácidos , Ativação Enzimática , Liases Intramoleculares/isolamento & purificação , Isomerismo , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Relação Estrutura-Atividade
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